FTP to IIS 6 Server from IIS 7 Server ASP.NET MVC?

This doesn't look like FTP issue. I suspect a difference in firewall settings. To troubleshoot, I would recommend to install free FTP client app, such as FileZilla and manually test the uploads and downloads.

Filezilla would show you the request/response details that may help to understand the root cause of your problem. You should also check the FTP server log files.

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