How can I download C. elegans-C.briggsae orthologs and their protein-coding DNA sequences?

One possible way to retrieve those would be to download a C. Elegans-C. Briggsae ortholog file: ftp://ftp.wormbase.org/pub/wormbase/briggsae/supporting_data_stein_2003/orthologs_and_orphans/orthologs.txt and C.

Briggsae gene sequences in fasta format (briggenes.fa. Gz): ftp://ftp.wormbase.org/pub/wormbase/briggsae/ and write a script that would parse C. Briggsae ortholog sequences based on C.

Elegans gene names. Another way would be to use WormMart to get a list of genes with orthologs (filter by Homolog/Ortholog -> HomologCompara Orholog). In the Attribute part you can select if you want to have the sequences or just a table of orthologs.

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