I’ve submitted millions of mouse SNPs, and have their submitted (ss) numbers — how do I check to see if they have refSNP (rs) numbers yet?

You can use BATCH query to search for a large number of submitted SNPs, but please note that BATCH query does not work for unclustered SNPs, so those SNPs in your list that have yet to be clustered will not show up on the report. Your rs assignments should be released in the next build if your SNPs were submitted before the data freeze. If you subscribe to the dbSNP announcements mailing list, you will be notified as to the release date of the next build.

For questions about BATCH queries, look in the BATCH query section of the dbSNP archive; specifically, the section entitled “Unable to Access Recently Submitted SNPs using BATCH”. More.

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