Those are parts of the specification for how Windows locates the certificate storage. The -sr location parameter tells the tool which certificate store to use: either currentuser to store it for the user, or localmachine to store it for everyone on the machine. The -ss parameter let's you give a name for a particular store, so you could, for example, have.
I'm not sure if it exists in windows server 2003 but in win XP I use the Microsoft Management Console to see all available certificates in windows store.
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