I think what you really meant to ask was regarding ' Multiple Aggregates in one transaction '. I don't believe there is anything wrong with using multiple repositories to fetch data in a transaction . Often during a transaction an aggregate will need information from other aggregates in order to make a decision on whether to, or how to, change state.
That's fine. It is, however, the modifying of state on multiple aggregates within one transaction that is deemed undesirable, and I think this what your referenced quote was trying to imply.
There's nothing wrong with using two repositories in one transaction. As JB Nizet points out, that's what a service layer is for.
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