Mysql Search - InnoDB and transactions vs MyISAM for FULLTEXT search?

It really depends on the application... Using MyISAM for anything that needs referential integrity is an instant fail. At the same time, it's text search isn't all that efficient.

MyISAM has several drawbacks - lack of transaction support, table-level locks which makes it very slow in heavy read+write load type. Another inconvenience of MyISAM tables - they are not crash safe so you can lost some data in case of unexpected shutdown or power loss on server. However MyISAM is very fast on some queries.

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