Ninject will dispose your objects as soon as the request object is collected by the GC. But normally this takes some time. But there is a way to force early disposal after the request ended.
The best way is to use Ninject.Web. MVC http://www.planetgeek.ch/2010/11/13/official-ninject-mvc-extension-gets-support-for-mvc3 instead of implementing your own ControllerFactory. The other way is to configure your application to use the OnePerRequestModule.
I'm not sure why you're surprised. I would be surprised if Ninject DID automatically call Dispose on objects. Making such assumptions would be dangerous, or at least unreliable.
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