Organizing Apex Classes under Namespace?

This is a limitation in the force.com stack that makes medium-large size projects painful, if not impractical. Using managed packages in order to get a package prefix doesn't really solve any problems, so it's not really worth the trouble.

Well, you can use managed packages, but as Jeremy mentioned it doesn't really buy you much. Of course managed packages are essential for developing publicly listed apps to sell on the AppExchange. But internally it's really an org-wide problem since once you create a managed package with a prefix, everything that touches any other part of it gets stamped with the same namespace prefix, including all custom objects.

And worse, you can't access code in a managed package from outside the managed package (which is actually the whole point of them in the first place).

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