Pointer assignment to dynamic array of structs?

I think the problem is here free(polynomialArrayindex. PolynomialTerm) if index > num_polynomial, then the value here polynomialArrayindex. PolynomialTerm is garbage.

You don't need to free it. Instead you should write it something like that.

I think the issue is that subtract is returning a pointer into your dynamically allocated array, but then insert realloc's that array, leaving the pointer returned by subtract (passed into insert as element) dangling.

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