The definitions of map weight for chromosome reports and database tables are indeed different:Chromosome ReportsDatabase Tables Mapweight 1 = UnmappedMapweight 1 = SNP aligns exactly at one locusMapweight 2 = Mapped to single position in genome Mapweight 2 = SNP aligns at two locus on same chromosomeMapweight 3 = Mapped to 2 positions on a single chromosome Mapweight 3 = SNP aligns at less than 10 locusMapweight 4 = Mapped to 3-10 positions in genome (possible paralog hits) Mapweight 5 = Mapped to >10 positions in genome Mapweight 10= SNP aligns at more than 10 locations The mapweight definitions for the database are different for historical reasons, so both definition series are correct: The mapweights defined in the chromosome reports section of the FTP README are true for chromosome reports, and the definitions given for the database tables in the database dictionary are true for all FTP data table files. More.
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